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pyDeid v0.0.4 documentation
pyDeid v0.0.4 documentation

Contents:

  • PyDeid
  • API Reference
    • pyDeid
      • pyDeid package
        • pyDeid.phi_types package
        • pyDeid.process_note package
        • pyDeid.wordlists package
  • Tutorials
    • Getting Started With pyDeid
    • Using spaCy NER with pyDeid
    • Evaluating pyDeid
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TutorialsΒΆ

This section contains tutorials for using pyDeid, presented as Jupyter notebooks.

Available Tutorials:

  • Getting Started With pyDeid
    • Running a basic example
    • pyDeid Features
    • Bulk De-identification
    • Putting It All Together
  • Using spaCy NER with pyDeid
    • Basic spaCy NER pipeline
    • Add medspaCy components
    • Create a custom NER pipeline for pyDeid
  • Evaluating pyDeid
    • Testing CSV output against a gold standard dataset with CSVEvaluator
    • Using the ETUDE Engine
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Getting Started With pyDeid
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pyDeid.wordlists package
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